/Companies

Omniome

Acquired

San Diego, US · Founded 2013 · 12 known investors

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Acquired by Pacific Biosciences of California, Inc. (PacBio) September 2021 · $800M (~$600M upfront (cash and stock) plus up to $200M in milestone payments, total ~$800M) · source ↗

San Diego DNA sequencing company behind the Sequencing by Binding short-read platform; acquired by Pacific Biosciences in 2021.

Also known as Omniome, Inc.

Founders & leadership

DS
David S. MullarkeyExecutive
AOArnold Oliphant
Arnold OliphantCTO2017–2021
KSKen Song, M.D., Ph.D.
Ken Song, M.D., Ph.D.Executive
KP
Kelly PerezExecutive
JM
John Murphy, Ph.D.Executive
MY
Millard Y ChanChief Operating Officer, Secretary and Director
KV
Kandaswamy VijayanExecutive

Board

BN
Boris Nikolic, M.D.Board director
MY
Michael YiBoard director
KK
Kim Kamdar, Ph.D.Board director
DC
David CruikshankBoard director
DZ
Dan ZabrowskiBoard director

Investors · 12

Also in the syndicate · 2

Altitude Life Sciences VenturesMadrone Capital Partnerslead

Funding

SEC filings, press & company announcements

$100.2M disclosed across 3 of 9 rounds · 2014–2020

▶$60MraisedDec 2019 · 2 investors · Biotechnology
Rule 506(b)
Officers, directors & promoters on the filing
  • Dan ZabrowskiDirector
  • Kim Kamdar, Ph.D.Director
  • David S. MullarkeyExecutive Officer, Director
  • Ken Song, M.D., Ph.D.Executive Officer, Director
  • Kelly PerezExecutive Officer
  • Arnold OliphantExecutive Officer
  • David CruikshankDirector
  • Michael YiDirector
  • Catherine LeeExecutive Officer
Offering amount
$60M
Amount sold
$60M
First sale
Nov 2019
Incorporated
Corporation, Delaware
Federal exemptions
06b
Full filing on SEC EDGAR ↗
▶$40MraisedFeb 2019 · 9 investors · Biotechnology
Rule 506(b)
Officers, directors & promoters on the filing
  • David S. MullarkeyExecutive Officer, Director
  • Arnold OliphantExecutive Officer
  • Boris Nikolic, M.D.Director
  • Ken Song, M.D., Ph.D.Executive Officer, Director
  • Michael YiDirector
  • Kelly PerezExecutive Officer
  • Kim Kamdar, Ph.D.Director
  • Dan ZabrowskiDirector
  • John Murphy, Ph.D.Executive Officer
  • David CruikshankDirector
Offering amount
$40M
Amount sold
$40M
First sale
Jun 2018
Incorporated
Corporation, Delaware
Federal exemptions
06b
Full filing on SEC EDGAR ↗
▶$225KraisedMay 2014 · 7 investors · Biotechnology
Rule 506(b)
Officers, directors & promoters on the filing
  • Millard Y ChanExecutive Officer, Director
  • Kandaswamy VijayanExecutive Officer, Director
Offering amount
$1M
Amount sold
$225K
Minimum investment
$25K
First sale
May 2014
Incorporated
Corporation, Delaware, 2013
Federal exemptions
06b
Full filing on SEC EDGAR ↗

Source: SEC EDGAR Form D. Amounts as filed; amended filings shown once at their latest values.

Company profile

researched Aug 2026

Omniome was a San Diego-based biotechnology company that developed a proprietary short-read DNA sequencing platform designed to deliver higher accuracy than conventional next-generation sequencing systems. Its core technology, marketed as Sequencing by Binding (SBB), was a chemistry developed specifically because clinical applications require accuracy levels that existing sequencing technologies struggle to achieve. The company positioned the platform as capable of higher sensitivity at lower cost, with intended applications in cancer diagnostics, single-cell analysis, and clinical sequencing more broadly.

The company was founded in 2013 and employed roughly 120 people at the time of its acquisition, with a headquarters in San Diego and, according to one aggregator, an additional location in Baltimore. It raised institutional venture capital across seed, Series A, Series B and Series C rounds, with total funding reported at approximately $127.6 million. In September 2021, Pacific Biosciences (Nasdaq: PACB) closed its acquisition of Omniome, combining Omniome's short-read technology with PacBio's SMRT long-read sequencing portfolio and establishing PacBio's San Diego site.

Founding story

Omniome was founded in 2013. Richard Shen, later company President, stated that the company was built on the belief that improvements in short-read accuracy are necessary for the expansion of NGS clinical testing applications and for confirmation of other technical approaches.

Business model

Omniome operated as a venture-backed instrument and consumables developer in the next-generation sequencing market, building a proprietary sequencing platform intended for commercial release to research and clinical customers. Sources describe the platform as still in development at the time of the acquisition, with PacBio stating it looked forward to releasing the product to customers in the near future.

Traction

Investors backed the company through multiple rounds totaling approximately $127.6 million, and it grew to roughly 120 employees by 2021. Its principal realized outcome was the September 2021 sale to Pacific Biosciences for approximately $316 million in cash plus about 9.4 million PACB shares, with additional milestone consideration of up to $200 million.

Latest developments

Pacific Biosciences closed its acquisition of Omniome on 20 September 2021, paying approximately $316 million in cash and about 9.4 million PACB shares at closing, with up to $200 million in further milestone-contingent consideration. PacBio simultaneously closed a $300 million private placement of approximately 11.2 million shares at $26.75 per share with a syndicate of life sciences investors in support of the transaction. PacBio said the Omniome team had continued platform development progress in the 60 days since the deal was announced.

▸Full profile — market position, technology, go-to-market, geography, history, risks & controversies

Market position

Omniome targeted the next-generation sequencing market as a challenger offering higher-accuracy short reads than competing systems. PacBio framed the acquisition as significantly expanding its market opportunity, particularly in the high-growth clinical segment.

Omniome's Sequencing by Binding chemistry was presented as having fundamental advantages over other sequencing technologies, with the potential for significant accuracy improvements over conventional NGS products, higher sensitivity, improved limit of detection, lower cost, and reduced computational burden. Following the acquisition, PacBio stated the combination made it the only company with both highly accurate long-read and short-read sequencing platforms.

Technology

The platform is based on Sequencing by Binding (SBB), a proprietary chemistry for short-read DNA sequencing developed to achieve accuracy levels needed for clinical applications. One aggregator reports 35 patents assigned to the company.

Go-to-market

The company described a mission of collaborating with the scientific community to deliver a short-read sequencing platform, and solicited collaboration and early-access data inquiries through its website prior to commercial launch.

Research and clinical genomics customers, with stated application areas including cancer diagnostics, single-cell applications, and clinical sequencing.

Geography

Headquartered in San Diego, California, with an additional location in Baltimore listed by one data aggregator. After the acquisition, Omniome employees continued to work from their existing offices, which became PacBio's San Diego presence alongside its Bay Area global headquarters.

History

Founded in 2013, Omniome raised an initial $1.0 million round in May 2014 and $6.6 million in seed funding in June 2014, followed by a Series A in January 2016, a $60 million Series B in July 2018 and a $60 million Series C in January 2020. Leadership changes in the company's final period included the appointment of Robert Wicke as Chief Executive Officer in November 2020, the promotion of Kelly Perez to Chief Operating Officer in December 2020, and the promotion of Richard Shen to President in May 2021. Pacific Biosciences announced the acquisition in July 2021 and closed it on 20 September 2021.

Risks & controversies

The sources do not report controversies. At the time of the acquisition the sequencing platform was still in development, and a portion of the deal consideration ($200 million) was contingent on achievement of a specified milestone, indicating remaining technical and commercial execution risk.

Compiled by commissioned research from 6 cited public sources — announcements, filings, and press listed under research sources below.

Key figures

latest reported
EmployeesAug 2026126 people
Estimated revenueAug 2026$8M-$38M (third-party estimate)
Patents assignedAug 202635 patents
Total fundingAug 2026$127.6M

Company-reported or press-reported figures, each dated to when it was claimed — not independently audited.

Founder mafia

4 people who came through Omniome went on to found or lead other companies.

Timeline · 4

launches, deals, and filings
Sep 2021
Pacific Biosciences closes acquisition of Omniome

PacBio closed its acquisition of Omniome, adding a high-accuracy short-read sequencing platform to its long-read portfolio and establishing a PacBio presence in San Diego. Consideration at closing was approximately $316 million in cash (including adjustments for indebtedness and working capital) and approximately 9.4 million shares of PacBio common stock (8.8 million issued at close, 0.6 million attributable to replacement stock options), with an additional $200 million (about $100 million cash and the remainder in shares) payable to former Omniome equity holders upon achievement of a specified milestone. PacBio concurrently closed a $300 million PIPE of about 11.2 million shares at $26.75 per share in support of the transaction.

$316M source ↗

May 2021
Richard Shen, PhD promoted to President

source ↗

Dec 2020
Kelly Perez promoted to Chief Operating Officer

source ↗

Nov 2020
Robert Wicke appointed Chief Executive Officer

source ↗

Dated company events from announcements, filings, and press; legal rows summarize public dockets and regulator releases.

▸Research sources · 6

primary sources listed

6 public sources were cited for this profile; the first-party ones are listed here.

Frequently asked questions

What does Omniome do?
San Diego DNA sequencing company behind the Sequencing by Binding short-read platform; acquired by Pacific Biosciences in 2021.
Who are Omniome's investors?
Omniome's investors include ARCH Venture Partners, ATEL Ventures, DCVC (Data Collective), Decheng Capital, Lam Capital, Pivotal Life Sciences, ALTITUDE LIFE SCIENCE VENTURES, Domain Associates and 2 more.
How much funding has Omniome raised?
Omniome has disclosed $100.2M raised across 3 of its 9 known rounds.
Where is Omniome headquartered?
Omniome is headquartered in San Diego, US.